J3_4IO9_004

3D structure

PDB id

4IO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4IO9|1|X|A|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4IO9_004 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.0751

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4IO9|1|X|C|1319
4IO9|1|X|A|1320
4IO9|1|X|A|1321
4IO9|1|X|G|1322
*
4IO9|1|X|C|1621
4IO9|1|X|G|1622
4IO9|1|X|C|1623
4IO9|1|X|A|1624
4IO9|1|X|A|1625
4IO9|1|X|A|1626
4IO9|1|X|C|1627
*
4IO9|1|X|G|1636
4IO9|1|X|U|1637
4IO9|1|X|G|1638

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34