J3_4IO9_010
3D structure
- PDB id
- 4IO9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCCAUAG*CGC*GUCAG
- Length
- 15 nucleotides
- Bulged bases
- 4IO9|1|Y|C|14, 4IO9|1|Y|U|16, 4IO9|1|Y|C|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4IO9_010 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.1262
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4IO9|1|Y|C|12
4IO9|1|Y|C|13
4IO9|1|Y|C|14
4IO9|1|Y|A|15
4IO9|1|Y|U|16
4IO9|1|Y|A|17
4IO9|1|Y|G|18
*
4IO9|1|Y|C|70
4IO9|1|Y|G|71
4IO9|1|Y|C|72
*
4IO9|1|Y|G|109
4IO9|1|Y|U|110
4IO9|1|Y|C|111
4IO9|1|Y|A|112
4IO9|1|Y|G|113
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain L
- 50S ribosomal protein L18
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
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