J3_4IOA_003

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.1

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4IOA|1|X|C|1311
4IOA|1|X|G|1312
4IOA|1|X|U|1313
4IOA|1|X|A|1314
4IOA|1|X|A|1315
4IOA|1|X|G|1316
*
4IOA|1|X|C|1641
4IOA|1|X|G|1642
4IOA|1|X|A|1643
*
4IOA|1|X|U|1656
4IOA|1|X|A|1657
4IOA|1|X|A|1658
4IOA|1|X|G|1659

Current chains

Chain X

23S ribosomal RNA

Nearby chains