Motif J3_32852.1 Version J3_32852.1 of this group appears in releases 3.2 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-7 | 4-10 | 4-11 | 5-6 | 8-9 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4IOA_003 | 4IOA | 0.0000 | 1 | X | LSU rRNA | C | 1311 | G | 1312 | U | 1313 | A | 1314 | G | 1316 | * | C | 1641 | G | 1642 | A | 1643 | * | U | 1656 | A | 1657 | A | 1658 | G | 1659 | cWW | tSH | tSs | ntHW | cWW | cWW | |
| 2 | J3_4Y4O_022 | 4Y4O | 0.0893 | 1 | 2A | LSU rRNA | C | 1298 | G | 1299 | U | 1300 | A | 1301 | G | 1303 | * | C | 1625 | G | 1626 | G | 1627 | * | U | 1639 | C | 1640 | A | 1641 | G | 1642 | cWW | tSH | tSs | ntHW | cWW | cWW | |
| 3 | J3_4WF9_004 | 4WF9 | 0.1665 | 1 | X | LSU rRNA | C | 1335 | G | 1336 | A | 1337 | U | 1338 | G | 1340 | * | C | 1669 | A | 1670 | A | 1671 | * | U | 1683 | A | 1684 | A | 1685 | G | 1686 | cWW | tSH | ntHH | tWW | cWW | cWW | |
| 4 | J3_5J7L_041 | 5J7L | 0.2091 | 1 | DA | LSU rRNA | C | 1298 | G | 1299 | G | 1300 | A | 1301 | G | 1303 | * | C | 1625 | A | 1626 | G | 1627 | * | C | 1639 | A | 1640 | A | 1641 | G | 1642 | cWW | tSH | ntHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAAG*CGA*UAAG | 1 |
| CGUAAG*CGG*UCAG | 1 |
| CGAUUG*CAA*UAAG | 1 |
| CGGAAG*CAG*CAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAA*G*AA | 1 |
| GUAA*G*CA | 1 |
| GAUU*A*AA | 1 |
| GGAA*A*AA | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tHW-F-F-cWW-cWW-F
- Heat map statistics
- Min 0.09 | Avg 0.13 | Max 0.21
Coloring options: