J3_4IOA_007

3D structure

PDB id

4IOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUC*GAG*UAGAAG

Length

12 nucleotides

Bulged bases

4IOA|1|X|G|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.1

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

4IOA|1|X|C|2274
4IOA|1|X|U|2275
4IOA|1|X|C|2276
*
4IOA|1|X|G|2300
4IOA|1|X|A|2301
4IOA|1|X|G|2302
*
4IOA|1|X|U|2311
4IOA|1|X|A|2312
4IOA|1|X|G|2313
4IOA|1|X|A|2314
4IOA|1|X|A|2315
4IOA|1|X|G|2316

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain T

50S ribosomal protein L27

Chain Y

5S ribosomal RNA; 5S rRNA