3D structure

PDB id
4IOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
Length
28 nucleotides
Bulged bases
4IOA|1|X|G|514, 4IOA|1|X|A|518
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4IOA_016 not in the Motif Atlas
Homologous match to J3_7A0S_015
Geometric discrepancy: 0.051
The information below is about J3_7A0S_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4IOA|1|X|G|30
4IOA|1|X|C|31
*
4IOA|1|X|G|485
4IOA|1|X|U|486
4IOA|1|X|G|487
4IOA|1|X|A|488
4IOA|1|X|A|489
4IOA|1|X|A|490
4IOA|1|X|A|491
4IOA|1|X|G|492
4IOA|1|X|A|493
4IOA|1|X|A|494
4IOA|1|X|C|495
*
4IOA|1|X|G|506
4IOA|1|X|A|507
4IOA|1|X|G|508
4IOA|1|X|U|509
4IOA|1|X|G|510
4IOA|1|X|A|511
4IOA|1|X|A|512
4IOA|1|X|A|513
4IOA|1|X|G|514
4IOA|1|X|A|515
4IOA|1|X|G|516
4IOA|1|X|A|517
4IOA|1|X|A|518
4IOA|1|X|C|519
4IOA|1|X|C|520

Current chains

Chain X
23S ribosomal RNA

Nearby chains

Chain N
50S ribosomal protein L20
Chain P
50S ribosomal protein L22
Chain R
50S ribosomal protein L24

Coloring options:


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