J3_4IOA_016
3D structure
- PDB id
- 4IOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 4IOA|1|X|G|514, 4IOA|1|X|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4IOA_016 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.051
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4IOA|1|X|G|30
4IOA|1|X|C|31
*
4IOA|1|X|G|485
4IOA|1|X|U|486
4IOA|1|X|G|487
4IOA|1|X|A|488
4IOA|1|X|A|489
4IOA|1|X|A|490
4IOA|1|X|A|491
4IOA|1|X|G|492
4IOA|1|X|A|493
4IOA|1|X|A|494
4IOA|1|X|C|495
*
4IOA|1|X|G|506
4IOA|1|X|A|507
4IOA|1|X|G|508
4IOA|1|X|U|509
4IOA|1|X|G|510
4IOA|1|X|A|511
4IOA|1|X|A|512
4IOA|1|X|A|513
4IOA|1|X|G|514
4IOA|1|X|A|515
4IOA|1|X|G|516
4IOA|1|X|A|517
4IOA|1|X|A|518
4IOA|1|X|C|519
4IOA|1|X|C|520
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L22
- Chain R
- 50S ribosomal protein L24
Coloring options: