J3_4JI4_015

3D structure

PDB id

4JI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.69 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4JI4|1|A|U|1212, 4JI4|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4JI4_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2603

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4JI4|1|A|C|990
4JI4|1|A|U|991
4JI4|1|A|U|992
4JI4|1|A|G|993
4JI4|1|A|A|994
4JI4|1|A|C|995
4JI4|1|A|A|996
4JI4|1|A|U|997
*
4JI4|1|A|A|1044
4JI4|1|A|C|1045
4JI4|1|A|A|1046
4JI4|1|A|G|1047
*
4JI4|1|A|C|1210
4JI4|1|A|U|1211
4JI4|1|A|U|1212
4JI4|1|A|A|1213
4JI4|1|A|C|1214
4JI4|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

RIBOSOMAL PROTEIN S14