J3_4JV5_015

3D structure

PDB id

4JV5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4JV5|1|A|U|1212, 4JV5|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4JV5_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1456

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4JV5|1|A|C|990
4JV5|1|A|U|991
4JV5|1|A|U|992
4JV5|1|A|G|993
4JV5|1|A|A|994
4JV5|1|A|C|995
4JV5|1|A|A|996
4JV5|1|A|U|997
*
4JV5|1|A|A|1044
4JV5|1|A|C|1045
4JV5|1|A|A|1046
4JV5|1|A|G|1047
*
4JV5|1|A|C|1210
4JV5|1|A|U|1211
4JV5|1|A|U|1212
4JV5|1|A|A|1213
4JV5|1|A|C|1214
4JV5|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14