J3_4JYA_015

3D structure

PDB id

4JYA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structures of pseudouridinilated stop codons with ASLs

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4JYA|1|A|U|1194, 4JYA|1|A|C|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4JYA_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1377

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4JYA|1|A|C|968
4JYA|1|A|U|969
4JYA|1|A|U|970
4JYA|1|A|G|971
4JYA|1|A|A|972
4JYA|1|A|C|973
4JYA|1|A|A|974
4JYA|1|A|U|975
*
4JYA|1|A|A|1027
4JYA|1|A|C|1028
4JYA|1|A|A|1029
4JYA|1|A|G|1030
*
4JYA|1|A|C|1192
4JYA|1|A|U|1193
4JYA|1|A|U|1194
4JYA|1|A|A|1195
4JYA|1|A|C|1196
4JYA|1|A|G|1197

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14