J3_4K0K_001
3D structure
- PDB id
- 4K0K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 30S ribosomal subunit complexed with a serine-ASL and mRNA containing a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUAG*CGAAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 4K0K|1|A|U|849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4K0K_001 not in the Motif Atlas
- Homologous match to J3_4LFB_001
- Geometric discrepancy: 0.078
- The information below is about J3_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
4K0K|1|A|C|810
4K0K|1|A|U|811
4K0K|1|A|A|812
4K0K|1|A|G|813
*
4K0K|1|A|C|835
4K0K|1|A|G|836
4K0K|1|A|A|837
4K0K|1|A|A|838
4K0K|1|A|G|839
*
4K0K|1|A|C|846
4K0K|1|A|G|847
4K0K|1|A|U|848
4K0K|1|A|U|849
4K0K|1|A|A|850
4K0K|1|A|A|851
4K0K|1|A|G|852
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S8
Coloring options: