J3_4KHP_015

3D structure

PDB id

4KHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4KHP|1|A|C|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KHP_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.133

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4KHP|1|A|C|968
4KHP|1|A|U|969
4KHP|1|A|U|970
4KHP|1|A|G|971
4KHP|1|A|A|972
4KHP|1|A|C|973
4KHP|1|A|A|974
4KHP|1|A|U|975
*
4KHP|1|A|A|1027
4KHP|1|A|C|1028
4KHP|1|A|A|1029
4KHP|1|A|G|1030
*
4KHP|1|A|C|1192
4KHP|1|A|U|1193
4KHP|1|A|U|1194
4KHP|1|A|A|1195
4KHP|1|A|C|1196
4KHP|1|A|G|1197

Current chains

Chain A

16S Ribosomal RNA

Nearby chains

Chain N

30S Ribosomal protein S14