J3_4KVB_015

3D structure

PDB id

4KVB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus HB27 30S ribosomal subunit lacking ribosomal protein S17

Experimental method

X-RAY DIFFRACTION

Resolution

4.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4KVB|1|A|U|1212, 4KVB|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KVB_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1163

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4KVB|1|A|C|990
4KVB|1|A|U|991
4KVB|1|A|U|992
4KVB|1|A|G|993
4KVB|1|A|A|994
4KVB|1|A|C|995
4KVB|1|A|A|996
4KVB|1|A|U|997
*
4KVB|1|A|A|1044
4KVB|1|A|C|1045
4KVB|1|A|A|1046
4KVB|1|A|G|1047
*
4KVB|1|A|C|1210
4KVB|1|A|U|1211
4KVB|1|A|U|1212
4KVB|1|A|A|1213
4KVB|1|A|C|1214
4KVB|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z