J3_4KZZ_006
3D structure
- PDB id
- 4KZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 7.03 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 4KZZ|1|i|G|1252, 4KZZ|1|i|A|1254
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4KZZ_006 not in the Motif Atlas
- Homologous match to J3_8P9A_078
- Geometric discrepancy: 0.2023
- The information below is about J3_8P9A_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4KZZ|1|i|C|1233
4KZZ|1|i|U|1234
4KZZ|1|i|U|1235
4KZZ|1|i|A|1236
4KZZ|1|i|A|1237
4KZZ|1|i|U|1238
4KZZ|1|i|U|1239
4KZZ|1|i|U|1240
*
4KZZ|1|i|G|1251
4KZZ|1|i|G|1252
4KZZ|1|i|G|1253
4KZZ|1|i|A|1254
4KZZ|1|i|A|1255
4KZZ|1|i|A|1256
4KZZ|1|i|C|1257
4KZZ|1|i|C|1258
4KZZ|1|i|U|1259
4KZZ|1|i|C|1260
4KZZ|1|i|A|1261
4KZZ|1|i|C|1262
*
4KZZ|1|i|G|1511
4KZZ|1|i|G|1512
4KZZ|1|i|C|1513
4KZZ|1|i|U|1514
4KZZ|1|i|G|1515
Current chains
- Chain i
- 18S Ribosomal RNA
Nearby chains
- Chain P
- 40S Ribosomal Protein S15
- Chain S
- 40S Ribosomal Protein S18
- Chain U
- 40S Ribosomal Protein S20
- Chain d
- 40S Ribosomal Protein S29
- Chain f
- 40S Ribosomal Protein S27A
- Chain n
- human initiation factor eIF1A
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