J3_4KZZ_007

3D structure

PDB id

4KZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 40S ribosomal subunit in complex with mRNA, initiator tRNA and eIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

7.03 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

4KZZ|1|i|G|1270, 4KZZ|1|i|G|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4KZZ_007 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1961

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4KZZ|1|i|C|1268
4KZZ|1|i|C|1269
4KZZ|1|i|G|1270
4KZZ|1|i|G|1271
4KZZ|1|i|A|1272
4KZZ|1|i|C|1273
*
4KZZ|1|i|G|1316
4KZZ|1|i|G|1317
4KZZ|1|i|G|1318
4KZZ|1|i|U|1319
4KZZ|1|i|G|1320
*
4KZZ|1|i|U|1500
4KZZ|1|i|U|1501
4KZZ|1|i|A|1502
4KZZ|1|i|G|1503
4KZZ|1|i|A|1504
4KZZ|1|i|U|1505
4KZZ|1|i|G|1506

Current chains

Chain i

18S Ribosomal RNA

Nearby chains

Chain K

40S Ribosomal Protein S10

Chain d

40S Ribosomal Protein S29

Chain f

40S Ribosomal Protein S27A