J3_4L47_008

3D structure

PDB id

4L47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4L47_008 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1529

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4L47|1|QA|C|990
4L47|1|QA|U|991
4L47|1|QA|U|992
4L47|1|QA|G|993
4L47|1|QA|A|994
4L47|1|QA|C|995
4L47|1|QA|A|996
4L47|1|QA|U|997
*
4L47|1|QA|A|1044
4L47|1|QA|C|1045
4L47|1|QA|A|1046
4L47|1|QA|G|1047
*
4L47|1|QA|C|1210
4L47|1|QA|U|1211
4L47|1|QA|U|1212
4L47|1|QA|A|1213
4L47|1|QA|C|1214
4L47|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14

Chain YA

Large subunit ribosomal RNA; LSU rRNA