J3_4L71_031

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4L71|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4L71_031 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1594

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4L71|1|XA|C|826
4L71|1|XA|U|827
4L71|1|XA|A|828
4L71|1|XA|G|829
*
4L71|1|XA|C|857
4L71|1|XA|G|858
4L71|1|XA|A|859
4L71|1|XA|A|860
4L71|1|XA|G|861
*
4L71|1|XA|C|868
4L71|1|XA|G|869
4L71|1|XA|U|870
4L71|1|XA|U|871
4L71|1|XA|A|872
4L71|1|XA|A|873
4L71|1|XA|G|874

Current chains

Chain XA

16S Ribosomal RNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8