J3_4L71_065

3D structure

PDB id

4L71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

4L71|1|XA|C|48, 4L71|1|XA|A|50, 4L71|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4L71_065 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0853

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4L71|1|XA|G|46
4L71|1|XA|C|47
4L71|1|XA|C|48
4L71|1|XA|U|49
4L71|1|XA|A|50
4L71|1|XA|A|51
4L71|1|XA|G|52
*
4L71|1|XA|U|359
4L71|1|XA|A|360
4L71|1|XA|G|361
4L71|1|XA|G|362
4L71|1|XA|A|363
4L71|1|XA|A|364
4L71|1|XA|U|365
4L71|1|XA|C|366
4L71|1|XA|U|367
*
4L71|1|XA|A|393
4L71|1|XA|G|394
4L71|1|XA|C|395

Current chains

Chain XA

16S Ribosomal RNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16