3D structure

PDB id
4L71 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4L71|1|YA|C|34, 4L71|1|YA|U|448, 4L71|1|YA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4L71_069 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0971
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4L71|1|YA|C|32
4L71|1|YA|U|33
4L71|1|YA|C|34
4L71|1|YA|G|35
*
4L71|1|YA|C|445
4L71|1|YA|G|446
4L71|1|YA|A|447
4L71|1|YA|U|448
4L71|1|YA|A|449
4L71|1|YA|G|450
4L71|1|YA|C|451
4L71|1|YA|G|452
4L71|1|YA|C|453
4L71|1|YA|A|454
4L71|1|YA|C|455
4L71|1|YA|C|456
4L71|1|YA|A|457
4L71|1|YA|G|458
4L71|1|YA|U|459
4L71|1|YA|A|460
4L71|1|YA|C|461
*
4L71|1|YA|G|468
4L71|1|YA|G|469
4L71|1|YA|A|470
4L71|1|YA|A|471
4L71|1|YA|A|472
4L71|1|YA|G|473

Current chains

Chain YA
23S Ribosomal RNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YF
50S ribosomal protein L4
Chain YU
50S ribosomal protein L20
Chain YX
50S ribosomal protein L23

Coloring options:


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