3D structure

PDB id
4LEL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
4LEL|1|RA|U|504, 4LEL|1|RA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LEL_058 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1467
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4LEL|1|RA|G|30
4LEL|1|RA|C|31
*
4LEL|1|RA|G|474
4LEL|1|RA|U|475
4LEL|1|RA|G|476
4LEL|1|RA|A|477
4LEL|1|RA|A|478
4LEL|1|RA|A|479
4LEL|1|RA|A|480
4LEL|1|RA|G|481
4LEL|1|RA|A|482
4LEL|1|RA|A|483
4LEL|1|RA|C|484
*
4LEL|1|RA|G|496
4LEL|1|RA|A|497
4LEL|1|RA|G|498
4LEL|1|RA|U|499
4LEL|1|RA|G|500
4LEL|1|RA|A|501
4LEL|1|RA|A|502
4LEL|1|RA|A|503
4LEL|1|RA|U|504
4LEL|1|RA|A|505
4LEL|1|RA|G|506
4LEL|1|RA|A|507
4LEL|1|RA|G|508
4LEL|1|RA|C|509
4LEL|1|RA|C|510

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22
Chain RY
50S ribosomal protein L24

Coloring options:


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