3D structure

PDB id
4LEL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.9 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4LEL|1|YA|C|34, 4LEL|1|YA|U|448, 4LEL|1|YA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LEL_067 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.0921
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4LEL|1|YA|C|32
4LEL|1|YA|U|33
4LEL|1|YA|C|34
4LEL|1|YA|G|35
*
4LEL|1|YA|C|445
4LEL|1|YA|G|446
4LEL|1|YA|A|447
4LEL|1|YA|U|448
4LEL|1|YA|A|449
4LEL|1|YA|G|450
4LEL|1|YA|C|451
4LEL|1|YA|G|452
4LEL|1|YA|C|453
4LEL|1|YA|A|454
4LEL|1|YA|C|455
4LEL|1|YA|C|456
4LEL|1|YA|A|457
4LEL|1|YA|G|458
4LEL|1|YA|U|459
4LEL|1|YA|A|460
4LEL|1|YA|C|461
*
4LEL|1|YA|G|468
4LEL|1|YA|G|469
4LEL|1|YA|A|470
4LEL|1|YA|A|471
4LEL|1|YA|A|472
4LEL|1|YA|G|473

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YF
50S ribosomal protein L4
Chain YU
50S ribosomal protein L20
Chain YX
50S ribosomal protein L23

Coloring options:


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