J3_4LF5_001

3D structure

PDB id

4LF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4LF5|1|A|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LF5_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0572

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4LF5|1|A|C|826
4LF5|1|A|U|827
4LF5|1|A|A|828
4LF5|1|A|G|829
*
4LF5|1|A|C|857
4LF5|1|A|G|858
4LF5|1|A|A|859
4LF5|1|A|A|860
4LF5|1|A|G|861
*
4LF5|1|A|C|868
4LF5|1|A|G|869
4LF5|1|A|U|870
4LF5|1|A|U|871
4LF5|1|A|A|872
4LF5|1|A|A|873
4LF5|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain H

ribosomal protein S8