J3_4LFA_001

3D structure

PDB id

4LFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4LFA|1|A|U|871, 4LFA|1|A|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFA_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0531

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4LFA|1|A|C|826
4LFA|1|A|U|827
4LFA|1|A|A|828
4LFA|1|A|G|829
*
4LFA|1|A|C|857
4LFA|1|A|G|858
4LFA|1|A|A|859
4LFA|1|A|A|860
4LFA|1|A|G|861
*
4LFA|1|A|C|868
4LFA|1|A|G|869
4LFA|1|A|U|870
4LFA|1|A|U|871
4LFA|1|A|A|872
4LFA|1|A|A|873
4LFA|1|A|G|874

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

ribosomal protein S2

Chain H

ribosomal protein S8