3D structure

PDB id
4LFA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Experimental method
X-RAY DIFFRACTION
Resolution
3.65 Å

Loop

Sequence
UG*CGCCGAUGG*CAG
Length
14 nucleotides
Bulged bases
4LFA|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LFA_012 not in the Motif Atlas
Homologous match to J3_4LFB_012
Geometric discrepancy: 0.0824
The information below is about J3_4LFB_012
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4LFA|1|A|U|672
4LFA|1|A|G|673
*
4LFA|1|A|C|717
4LFA|1|A|G|718
4LFA|1|A|C|719
4LFA|1|A|C|720
4LFA|1|A|G|721
4LFA|1|A|A|722
4LFA|1|A|U|723
4LFA|1|A|G|724
4LFA|1|A|G|725
*
4LFA|1|A|C|732
4LFA|1|A|A|733
4LFA|1|A|G|734

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
ribosomal protein S6
Chain K
ribosomal protein S11
Chain O
ribosomal protein S15
Chain R
ribosomal protein S18

Coloring options:


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