J3_4LFA_016

3D structure

PDB id

4LFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4LFA|1|A|U|1212, 4LFA|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFA_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1438

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4LFA|1|A|C|990
4LFA|1|A|U|991
4LFA|1|A|U|992
4LFA|1|A|G|993
4LFA|1|A|A|994
4LFA|1|A|C|995
4LFA|1|A|A|996
4LFA|1|A|U|997
*
4LFA|1|A|A|1044
4LFA|1|A|C|1045
4LFA|1|A|A|1046
4LFA|1|A|G|1047
*
4LFA|1|A|C|1210
4LFA|1|A|U|1211
4LFA|1|A|U|1212
4LFA|1|A|A|1213
4LFA|1|A|C|1214
4LFA|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

ribosomal protein S14