J3_4LFC_016

3D structure

PDB id

4LFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4LFC|1|A|U|1212, 4LFC|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFC_016 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.0872

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4LFC|1|A|C|990
4LFC|1|A|U|991
4LFC|1|A|U|992
4LFC|1|A|G|993
4LFC|1|A|A|994
4LFC|1|A|C|995
4LFC|1|A|A|996
4LFC|1|A|U|997
*
4LFC|1|A|A|1044
4LFC|1|A|C|1045
4LFC|1|A|A|1046
4LFC|1|A|G|1047
*
4LFC|1|A|C|1210
4LFC|1|A|U|1211
4LFC|1|A|U|1212
4LFC|1|A|A|1213
4LFC|1|A|C|1214
4LFC|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

ribosomal protein S14