J3_4LFZ_004

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4LFZ|1|QA|U|871, 4LFZ|1|QA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFZ_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1063

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4LFZ|1|QA|C|826
4LFZ|1|QA|U|827
4LFZ|1|QA|A|828
4LFZ|1|QA|G|829
*
4LFZ|1|QA|C|857
4LFZ|1|QA|G|858
4LFZ|1|QA|A|859
4LFZ|1|QA|A|860
4LFZ|1|QA|G|861
*
4LFZ|1|QA|C|868
4LFZ|1|QA|G|869
4LFZ|1|QA|U|870
4LFZ|1|QA|U|871
4LFZ|1|QA|A|872
4LFZ|1|QA|A|873
4LFZ|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8