J3_4LFZ_037

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4LFZ|1|XA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFZ_037 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1529

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4LFZ|1|XA|C|1237
4LFZ|1|XA|A|1238
4LFZ|1|XA|A|1239
4LFZ|1|XA|U|1240
4LFZ|1|XA|G|1241
*
4LFZ|1|XA|C|1296
4LFZ|1|XA|C|1297
4LFZ|1|XA|C|1298
4LFZ|1|XA|A|1299
4LFZ|1|XA|G|1300
4LFZ|1|XA|U|1301
4LFZ|1|XA|U|1302
4LFZ|1|XA|C|1303
*
4LFZ|1|XA|G|1334
4LFZ|1|XA|C|1335
4LFZ|1|XA|C|1336
4LFZ|1|XA|G|1337

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein S21