J3_4LFZ_066

3D structure

PDB id

4LFZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.92 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4LFZ|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LFZ_066 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1574

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4LFZ|1|XA|C|990
4LFZ|1|XA|U|991
4LFZ|1|XA|U|992
4LFZ|1|XA|G|993
4LFZ|1|XA|A|994
4LFZ|1|XA|C|995
4LFZ|1|XA|A|996
4LFZ|1|XA|U|997
*
4LFZ|1|XA|A|1044
4LFZ|1|XA|C|1045
4LFZ|1|XA|A|1046
4LFZ|1|XA|G|1047
*
4LFZ|1|XA|C|1210
4LFZ|1|XA|U|1211
4LFZ|1|XA|U|1212
4LFZ|1|XA|A|1213
4LFZ|1|XA|C|1214
4LFZ|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XN

30S ribosomal protein S14