J3_4LFZ_068
3D structure
- PDB id
- 4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.92 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4LFZ|1|YA|U|504, 4LFZ|1|YA|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4LFZ_068 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1536
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4LFZ|1|YA|G|30
4LFZ|1|YA|C|31
*
4LFZ|1|YA|G|474
4LFZ|1|YA|U|475
4LFZ|1|YA|G|476
4LFZ|1|YA|A|477
4LFZ|1|YA|A|478
4LFZ|1|YA|A|479
4LFZ|1|YA|A|480
4LFZ|1|YA|G|481
4LFZ|1|YA|A|482
4LFZ|1|YA|A|483
4LFZ|1|YA|C|484
*
4LFZ|1|YA|G|496
4LFZ|1|YA|A|497
4LFZ|1|YA|G|498
4LFZ|1|YA|U|499
4LFZ|1|YA|G|500
4LFZ|1|YA|A|501
4LFZ|1|YA|A|502
4LFZ|1|YA|A|503
4LFZ|1|YA|U|504
4LFZ|1|YA|A|505
4LFZ|1|YA|G|506
4LFZ|1|YA|A|507
4LFZ|1|YA|G|508
4LFZ|1|YA|C|509
4LFZ|1|YA|C|510
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YU
- 50S ribosomal protein L20
- Chain YW
- 50S ribosomal protein L22
- Chain YY
- 50S ribosomal protein L24
Coloring options: