J3_4LFZ_075
3D structure
- PDB id
- 4LFZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.92 Å
Loop
- Sequence
- CCCAUAG*CGC*GUCGG
- Length
- 15 nucleotides
- Bulged bases
- 4LFZ|1|YB|U|14, 4LFZ|1|YB|C|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4LFZ_075 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.2881
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4LFZ|1|YB|C|10
4LFZ|1|YB|C|11
4LFZ|1|YB|C|12
4LFZ|1|YB|A|13
4LFZ|1|YB|U|14
4LFZ|1|YB|A|15
4LFZ|1|YB|G|16
*
4LFZ|1|YB|C|68
4LFZ|1|YB|G|69
4LFZ|1|YB|C|70
*
4LFZ|1|YB|G|106
4LFZ|1|YB|U|107
4LFZ|1|YB|C|108
4LFZ|1|YB|G|109
4LFZ|1|YB|G|110
Current chains
- Chain YB
- 5S rRNA
Nearby chains
- Chain Y0
- 50S ribosomal protein L27
- Chain YA
- Large subunit ribosomal RNA; LSU rRNA
- Chain YS
- 50S ribosomal protein L18
- Chain YZ
- 50S ribosomal protein L25
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