J3_4LNT_008

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LNT_008 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1559

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

4LNT|1|QA|C|990
4LNT|1|QA|U|991
4LNT|1|QA|U|992
4LNT|1|QA|G|993
4LNT|1|QA|A|994
4LNT|1|QA|C|995
4LNT|1|QA|A|996
4LNT|1|QA|U|997
*
4LNT|1|QA|A|1044
4LNT|1|QA|C|1045
4LNT|1|QA|A|1046
4LNT|1|QA|G|1047
*
4LNT|1|QA|C|1210
4LNT|1|QA|U|1211
4LNT|1|QA|U|1212
4LNT|1|QA|A|1213
4LNT|1|QA|C|1214
4LNT|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14

Chain YA

Large subunit ribosomal RNA; LSU rRNA