J3_4LNT_013

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4LNT|1|QA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LNT_013 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1313

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4LNT|1|QA|C|1237
4LNT|1|QA|A|1238
4LNT|1|QA|A|1239
4LNT|1|QA|U|1240
4LNT|1|QA|G|1241
*
4LNT|1|QA|C|1296
4LNT|1|QA|C|1297
4LNT|1|QA|C|1298
4LNT|1|QA|A|1299
4LNT|1|QA|G|1300
4LNT|1|QA|U|1301
4LNT|1|QA|U|1302
4LNT|1|QA|C|1303
*
4LNT|1|QA|G|1334
4LNT|1|QA|C|1335
4LNT|1|QA|C|1336
4LNT|1|QA|G|1337

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QG

30S ribosomal protein S7

Chain QM

30S ribosomal protein S13

Chain QU

30S ribosomal protein S21