J3_4LNT_031

3D structure

PDB id

4LNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.94 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4LNT|1|XA|U|871, 4LNT|1|XA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LNT_031 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0777

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4LNT|1|XA|C|826
4LNT|1|XA|U|827
4LNT|1|XA|A|828
4LNT|1|XA|G|829
*
4LNT|1|XA|C|857
4LNT|1|XA|G|858
4LNT|1|XA|A|859
4LNT|1|XA|A|860
4LNT|1|XA|G|861
*
4LNT|1|XA|C|868
4LNT|1|XA|G|869
4LNT|1|XA|U|870
4LNT|1|XA|U|871
4LNT|1|XA|A|872
4LNT|1|XA|A|873
4LNT|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8