J3_4LSK_004

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4LSK|1|QA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LSK_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1786

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4LSK|1|QA|C|826
4LSK|1|QA|U|827
4LSK|1|QA|A|828
4LSK|1|QA|G|829
*
4LSK|1|QA|C|857
4LSK|1|QA|G|858
4LSK|1|QA|A|859
4LSK|1|QA|A|860
4LSK|1|QA|G|861
*
4LSK|1|QA|C|868
4LSK|1|QA|G|869
4LSK|1|QA|U|870
4LSK|1|QA|U|871
4LSK|1|QA|A|872
4LSK|1|QA|A|873
4LSK|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8