J3_4LSK_055

3D structure

PDB id

4LSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.48 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4LSK|1|YA|G|2833, 4LSK|1|YA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4LSK_055 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.1573

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4LSK|1|YA|C|2814
4LSK|1|YA|C|2815
*
4LSK|1|YA|G|2831
4LSK|1|YA|U|2832
4LSK|1|YA|G|2833
4LSK|1|YA|G|2834
4LSK|1|YA|A|2835
4LSK|1|YA|U|2836
*
4LSK|1|YA|A|2882
4LSK|1|YA|A|2883
4LSK|1|YA|U|2884
4LSK|1|YA|C|2885
4LSK|1|YA|G|2886

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y5

50S ribosomal protein L32

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17

Chain YT

50S ribosomal protein L19