J3_9DFE_019

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

9DFE|1|1A|G|2833, 9DFE|1|1A|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9DFE|1|1A|C|2814
9DFE|1|1A|C|2815
*
9DFE|1|1A|G|2831
9DFE|1|1A|U|2832
9DFE|1|1A|G|2833
9DFE|1|1A|G|2834
9DFE|1|1A|A|2835
9DFE|1|1A|U|2836
*
9DFE|1|1A|A|2882
9DFE|1|1A|A|2883
9DFE|1|1A|U|2884
9DFE|1|1A|C|2885
9DFE|1|1A|G|2886

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19