3D structure

PDB id
4LSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.48 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
4LSK|1|RA|U|504, 4LSK|1|RA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4LSK_060 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1252
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4LSK|1|RA|G|30
4LSK|1|RA|C|31
*
4LSK|1|RA|G|474
4LSK|1|RA|U|475
4LSK|1|RA|G|476
4LSK|1|RA|A|477
4LSK|1|RA|A|478
4LSK|1|RA|A|479
4LSK|1|RA|A|480
4LSK|1|RA|G|481
4LSK|1|RA|A|482
4LSK|1|RA|A|483
4LSK|1|RA|C|484
*
4LSK|1|RA|G|496
4LSK|1|RA|A|497
4LSK|1|RA|G|498
4LSK|1|RA|U|499
4LSK|1|RA|G|500
4LSK|1|RA|A|501
4LSK|1|RA|A|502
4LSK|1|RA|A|503
4LSK|1|RA|U|504
4LSK|1|RA|A|505
4LSK|1|RA|G|506
4LSK|1|RA|A|507
4LSK|1|RA|G|508
4LSK|1|RA|C|509
4LSK|1|RA|C|510

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22
Chain RY
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1974 s