J3_4NXM_015

3D structure

PDB id

4NXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 30S ribosomal subunit from a GidB (RsmG) mutant of Thermus thermophilus (HB8)

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4NXM_015 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2462

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4NXM|1|A|C|990
4NXM|1|A|U|991
4NXM|1|A|U|992
4NXM|1|A|G|993
4NXM|1|A|A|994
4NXM|1|A|C|995
4NXM|1|A|A|996
4NXM|1|A|U|997
*
4NXM|1|A|A|1044
4NXM|1|A|C|1045
4NXM|1|A|A|1046
4NXM|1|A|G|1047
*
4NXM|1|A|C|1210
4NXM|1|A|U|1211
4NXM|1|A|U|1212
4NXM|1|A|A|1213
4NXM|1|A|C|1214
4NXM|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

ribosomal protein S14