3D structure

PDB id
4OX9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CUAG*CGAAG*CGUUAAG
Length
16 nucleotides
Bulged bases
4OX9|1|A|U|871, 4OX9|1|A|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4OX9_001 not in the Motif Atlas
Homologous match to J3_4LFB_001
Geometric discrepancy: 0.0512
The information below is about J3_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

4OX9|1|A|C|826
4OX9|1|A|U|827
4OX9|1|A|A|828
4OX9|1|A|G|829
*
4OX9|1|A|C|857
4OX9|1|A|G|858
4OX9|1|A|A|859
4OX9|1|A|A|860
4OX9|1|A|G|861
*
4OX9|1|A|C|868
4OX9|1|A|G|869
4OX9|1|A|U|870
4OX9|1|A|U|871
4OX9|1|A|A|872
4OX9|1|A|A|873
4OX9|1|A|G|874

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain H
30S ribosomal protein S8

Coloring options:


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