3D structure

PDB id
4OX9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the aminoglycoside resistance methyltransferase NpmA bound to the 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.8 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
4OX9|1|A|U|1240, 4OX9|1|A|U|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4OX9_009 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.0741
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4OX9|1|A|C|1237
4OX9|1|A|A|1238
4OX9|1|A|A|1239
4OX9|1|A|U|1240
4OX9|1|A|G|1241
*
4OX9|1|A|C|1296
4OX9|1|A|C|1297
4OX9|1|A|C|1298
4OX9|1|A|A|1299
4OX9|1|A|G|1300
4OX9|1|A|U|1301
4OX9|1|A|U|1302
4OX9|1|A|C|1303
*
4OX9|1|A|G|1334
4OX9|1|A|C|1335
4OX9|1|A|C|1336
4OX9|1|A|G|1337

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
30S ribosomal protein S13
Chain V
30S ribosomal protein Thx

Coloring options:


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