J3_4P70_030

3D structure

PDB id

4P70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4P70|1|XA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4P70_030 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0956

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4P70|1|XA|C|826
4P70|1|XA|U|827
4P70|1|XA|A|828
4P70|1|XA|G|829
*
4P70|1|XA|C|857
4P70|1|XA|G|858
4P70|1|XA|A|859
4P70|1|XA|A|860
4P70|1|XA|G|861
*
4P70|1|XA|C|868
4P70|1|XA|G|869
4P70|1|XA|U|870
4P70|1|XA|U|871
4P70|1|XA|A|872
4P70|1|XA|A|873
4P70|1|XA|G|874

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XB

30S ribosomal protein S2

Chain XH

30S ribosomal protein S8