3D structure

PDB id
4P70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.68 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
4P70|1|RA|U|504, 4P70|1|RA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4P70_059 not in the Motif Atlas
Homologous match to J3_4WF9_011
Geometric discrepancy: 0.1514
The information below is about J3_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4P70|1|RA|G|30
4P70|1|RA|C|31
*
4P70|1|RA|G|474
4P70|1|RA|U|475
4P70|1|RA|G|476
4P70|1|RA|A|477
4P70|1|RA|A|478
4P70|1|RA|A|479
4P70|1|RA|A|480
4P70|1|RA|G|481
4P70|1|RA|A|482
4P70|1|RA|A|483
4P70|1|RA|C|484
*
4P70|1|RA|G|496
4P70|1|RA|A|497
4P70|1|RA|G|498
4P70|1|RA|U|499
4P70|1|RA|G|500
4P70|1|RA|A|501
4P70|1|RA|A|502
4P70|1|RA|A|503
4P70|1|RA|U|504
4P70|1|RA|A|505
4P70|1|RA|G|506
4P70|1|RA|A|507
4P70|1|RA|G|508
4P70|1|RA|C|509
4P70|1|RA|C|510

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22
Chain RY
50S ribosomal protein L24

Coloring options:


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