3D structure

PDB id
4P70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.68 Å

Loop

Sequence
CUCG*CGAUAGCGCACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
4P70|1|YA|U|448, 4P70|1|YA|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4P70_073 not in the Motif Atlas
Homologous match to J3_9DFE_003
Geometric discrepancy: 0.1139
The information below is about J3_9DFE_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

4P70|1|YA|C|32
4P70|1|YA|U|33
4P70|1|YA|C|34
4P70|1|YA|G|35
*
4P70|1|YA|C|445
4P70|1|YA|G|446
4P70|1|YA|A|447
4P70|1|YA|U|448
4P70|1|YA|A|449
4P70|1|YA|G|450
4P70|1|YA|C|451
4P70|1|YA|G|452
4P70|1|YA|C|453
4P70|1|YA|A|454
4P70|1|YA|C|455
4P70|1|YA|C|456
4P70|1|YA|A|457
4P70|1|YA|G|458
4P70|1|YA|U|459
4P70|1|YA|A|460
4P70|1|YA|C|461
*
4P70|1|YA|G|468
4P70|1|YA|G|469
4P70|1|YA|A|470
4P70|1|YA|A|471
4P70|1|YA|A|472
4P70|1|YA|G|473

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y7
50S ribosomal protein L34
Chain YF
50S ribosomal protein L4
Chain YU
50S ribosomal protein L20
Chain YX
50S ribosomal protein L23

Coloring options:


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