J3_4QCN_005
3D structure
- PDB id
- 4QCN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA- substrates in the A and P sites. This entry contains the 50S subunit of the first 70S ribosome in the ASU.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4QCN_005 not in the Motif Atlas
- Geometric match to J3_9DFE_014
- Geometric discrepancy: 0.0527
- The information below is about J3_9DFE_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
4QCN|1|A|U|2113
4QCN|1|A|U|2114
4QCN|1|A|G|2115
*
4QCN|1|A|C|2218
4QCN|1|A|U|2219
4QCN|1|A|A|2220
4QCN|1|A|A|2221
4QCN|1|A|C|2222
*
4QCN|1|A|G|2235
4QCN|1|A|G|2236
4QCN|1|A|A|2237
4QCN|1|A|C|2238
4QCN|1|A|A|2239
4QCN|1|A|G|2240
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L28
- Chain D
- 50S ribosomal protein L2
- Chain I
- 50S ribosomal protein L9
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