J3_4QCN_006
3D structure
- PDB id
- 4QCN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA- substrates in the A and P sites. This entry contains the 50S subunit of the first 70S ribosome in the ASU.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CUC*GAG*UAGAAG
- Length
- 12 nucleotides
- Bulged bases
- 4QCN|1|A|G|2346
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4QCN_006 not in the Motif Atlas
- Geometric match to J3_9DFE_016
- Geometric discrepancy: 0.0596
- The information below is about J3_9DFE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4QCN|1|A|C|2307
4QCN|1|A|U|2308
4QCN|1|A|C|2309
*
4QCN|1|A|G|2333
4QCN|1|A|A|2334
4QCN|1|A|G|2335
*
4QCN|1|A|U|2344
4QCN|1|A|A|2345
4QCN|1|A|G|2346
4QCN|1|A|A|2347
4QCN|1|A|A|2348
4QCN|1|A|G|2349
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L27
- Chain B
- 5S Ribosomal RNA
- Chain G
- 50S ribosomal protein L5
- Chain S
- 50S ribosomal protein L18
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