J3_4QK8_001

3D structure

PDB id

4QK8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermoanaerobacter pseudethanolicus c-di-AMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGAAUC*GUAC*GGAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-di-AMP riboswitch

Broad Annotation

No text annotation

Motif group

J3_54393.1

Basepair signature

cWW-tSH-cSS-tHS-F-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4QK8|1|A|C|7
4QK8|1|A|G|8
4QK8|1|A|A|9
4QK8|1|A|A|10
4QK8|1|A|U|11
4QK8|1|A|C|12
*
4QK8|1|A|G|19
4QK8|1|A|U|20
4QK8|1|A|A|21
4QK8|1|A|C|22
*
4QK8|1|A|G|103
4QK8|1|A|G|104
4QK8|1|A|A|105
4QK8|1|A|G|106

Current chains

Chain A

C-di-AMP riboswitch

Nearby chains