Motif J3_54393.1 Version J3_54393.1 of this group appears in releases 3.2 to 3.25
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-10 | 3-11 | 5-8 | 6-7 | 9-12 | 10-11 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_4QK8_001 | 4QK8 | 0.1497 | 0 | C-di-AMP riboswitch | A | C-di-AMP riboswitch | C | 7 | G | 8 | A | 9 | A | 10 | U | 11 | C | 12 | * | G | 19 | U | 20 | A | 21 | C | 22 | * | G | 103 | G | 104 | A | 105 | G | 106 | cWW | tSH | cSs | tSs | cWw | cWW | tHS | cWW |
| 2 | J3_4QK8_002 | 4QK8 | 0.0000 | 0 | C-di-AMP riboswitch | A | C-di-AMP riboswitch | U | 43 | U | 44 | A | 45 | A | 46 | U | 47 | C | 48 | * | G | 64 | U | 65 | A | 66 | G | 67 | * | C | 83 | G | 84 | C | 85 | A | 86 | cWW | ntSH | cSs | cWw | cWW | tHS | cWW | |
| 3 | J3_4QLM_001 | 4QLM | 0.1273 | 0 | C-di-AMP riboswitch | A | cyclic di-AMP riboswitch | C | 43 | G | 44 | A | 45 | A | 46 | U | 47 | C | 48 | * | G | 65 | U | 66 | A | 67 | G | 68 | * | C | 85 | G | 86 | A | 87 | G | 88 | cWW | tSH | cSs | cWw | cWW | tHS | cWW | |
| 4 | J3_4QK9_001 | 4QK9 | 0.1112 | 0 | C-di-AMP riboswitch | A | C-di-AMP riboswitch | U | 47 | G | 48 | A | 49 | A | 50 | U | 51 | C | 52 | * | G | 65 | U | 66 | A | 67 | G | 68 | * | C | 87 | G | 88 | A | 89 | A | 90 | cWW | tSH | cSs | ntSs | cWw | cWW | tHS | cWW |
| 5 | J3_4W90_001 | 4W90 | 0.1321 | 0 | C-di-AMP riboswitch | C | cyclic di-AMP riboswitch | U | 62 | G | 63 | A | 64 | A | 65 | U | 66 | C | 67 | * | G | 76 | U | 77 | A | 78 | G | 79 | * | C | 90 | G | 91 | A | 92 | A | 93 | cWW | tSH | cSs | cWw | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAUC*GUAG*CGAA | 2 |
| CGAAUC*GUAC*GGAG | 1 |
| UUAAUC*GUAG*CGCA | 1 |
| CGAAUC*GUAG*CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAU*UA*GA | 4 |
| UAAU*UA*GC | 1 |
Release history
| Release | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-02-09 | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- C-di-AMP riboswitch (5)
- Basepair signature
- cWW-tSH-cSS-tHS-F-cWW-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.10 | Max 0.17
Coloring options: