J3_4R4P_005

3D structure

PDB id

4R4P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the VS ribozyme-A756G mutant

Experimental method

X-RAY DIFFRACTION

Resolution

3.07 Å

Loop

Sequence

GAAC*GG*CACAAGC

Length

13 nucleotides

Bulged bases

4R4P|1|A|A|657||||8_555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4R4P_005 not in the Motif Atlas

Geometric match to J3_4R4V_002

Geometric discrepancy: 0.0928

The information below is about J3_4R4V_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_51910.1

Basepair signature

cWW-F-cWW-tWS-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4R4P|1|A|G|655||||8_555
4R4P|1|A|A|656||||8_555
4R4P|1|A|A|657||||8_555
4R4P|1|A|C|658||||8_555
*
4R4P|1|A|G|716||||8_555
4R4P|1|A|G|717||||8_555
*
4R4P|1|A|C|758||||8_555
4R4P|1|A|A|759||||8_555
4R4P|1|A|C|760||||8_555
4R4P|1|A|A|761||||8_555
4R4P|1|A|A|762||||8_555
4R4P|1|A|G|763||||8_555
4R4P|1|A|C|764||||8_555

Current chains

Chain A

VS ribozyme RNA

Nearby chains