3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
4TUB|1|QA|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4TUB_013 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1713
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4TUB|1|QA|C|1237
4TUB|1|QA|A|1238
4TUB|1|QA|A|1239
4TUB|1|QA|U|1240
4TUB|1|QA|G|1241
*
4TUB|1|QA|C|1296
4TUB|1|QA|C|1297
4TUB|1|QA|C|1298
4TUB|1|QA|A|1299
4TUB|1|QA|G|1300
4TUB|1|QA|U|1301
4TUB|1|QA|U|1302
4TUB|1|QA|C|1303
*
4TUB|1|QA|G|1334
4TUB|1|QA|C|1335
4TUB|1|QA|C|1336
4TUB|1|QA|G|1337

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QG
30S ribosomal protein S7
Chain QM
30S ribosomal protein S13
Chain QU
30S ribosomal protein Thx

Coloring options:


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