3D structure

PDB id
4TUB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA-Thr bound to Codon ACC-C on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.6 Å

Loop

Sequence
GC*GUGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4TUB_014 not in the Motif Atlas
Homologous match to J3_7RQB_001
Geometric discrepancy: 0.0666
The information below is about J3_7RQB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_65070.3
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
4

Unit IDs

4TUB|1|RA|G|30
4TUB|1|RA|C|31
*
4TUB|1|RA|G|500
4TUB|1|RA|U|501
4TUB|1|RA|G|502
4TUB|1|RA|A|503
4TUB|1|RA|A|504
4TUB|1|RA|A|505
4TUB|1|RA|A|506
4TUB|1|RA|G|507
*
4TUB|1|RA|C|534
4TUB|1|RA|C|535

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22
Chain RY
50S ribosomal protein L24

Coloring options:


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